Zheng Y

Latest

ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets
Total whole-arm chromosome losses predict malignancy in human cancer
⭐⭐⭐RNA Polymerase II at histone genes predicts outcome in human cancer⭐⭐⭐
Histone marks identify novel transcription factors that parse CAR-T subset-of-origin, clinical potential and expansion
Mitotic errors do not explain aneuploidy in cancer
Histone Methylation Mark Analyses Distinguish Carts Manufactured from Distinct Sources and Uncover Novel Transcription Factors Associated with In Vivo Function of Carts after Infusion into DLBCL Patients That Are Not Identified By RNA-Seq
CUT&RUN and CUT&Tag
Defining cellular population dynamics at single cell resolution during prostate cancer progression
Cellular profiling of leukapheresis and infusion products of patients enrolled in CD19 CAR T cell therapy identifies biomarkers associated with clinical outcomes
Regulatory architecture of the RCA gene cluster captures an intragenic TAD boundary and enhancer elements in B cells
scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data
Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D
Long-Term Follow-up and Single-Cell Multiomics Characteristics of Infusion Products in Patients with Chronic Lymphocytic Leukemia Treated with CD19 CAR-T Cells
FreeHi-C Spike-in Simulations for Benchmarking Differential Chromatin Interaction Detection
Single-cell CUTTag analysis of chromatin modifications in differentiation and tumor progression
Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder
Optimal therapeutic targeting by HDAC inhibition in biopsy-derived treatment-naïve diffuse midline glioma models
Discovering How Heme Controls Genome Function Through Heme-omics
CUTTag Data Processing and Analysis Tutorial
FreeHi-C simulates high-fidelity Hi-C data for benchmarking and data augmentation
Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies
Single-nucleotide human disease mutation inactivates a blood-regenerative GATA2 enhancer
GATA/Heme Multi-omics Reveals a Trace Metal-dependent Cellular Differentiation Mechanism
Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-enhanced Read Mapping