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Python
scVI-3D
Deep generative modeling framework for normalization and de-noising of single-cell Hi-C data
Ye Zheng, Siqi Shen . (2024)
May 26, 2024
GitHub
FreeHiC
High-fidelity Hi-C data simulation pipeline using Fragment Interactions Empirical Estimation method
Ye Zheng . (2021)
Apr 29, 2021
GitHub
FreeHiC Spike-In
Python pipeline for simulating differential chromatin interactions with data-driven or user-specified spike-ins
Ye Zheng . (2021)
Apr 28, 2021
GitHub
mHiC
Robust Hi-C analysis pipeline incorporating multi-mapping reads through probabilistic assignment
Ye Zheng . (2019)
Nov 30, 2019
GitHub
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