Single-Cell

A robust normalization and integration method for CITE-seq protein data analysis

Ye Zheng . (2024)

Dec 29, 2024

ADTnorm

Deep generative modeling framework for normalization and de-noising of single-cell Hi-C data

Ye Zheng, Siqi Shen . (2024)

May 26, 2024

ADTnorm: Robust Integration of Single-cell Protein Measurement across CITE-seq Datasets

CITE-seq enables paired measurement of surface protein and mRNA expression in single cells using antibodies conjugated to …

Zheng Y , Caron D, Kim J, Jun S, Tian Y, Florian M, Stuart K, Sims P, Gottardo R

R package for extracting three-dimensional chromatin interactions at the gene level and integrating single-cell 3D genomics with other modalities

Jan 15, 2024

Fast and efficient band normalization method for single-cell Hi-C data analysis

Ye Zheng, Siqi Shen . (2023)

Nov 9, 2023

BandNorm

Long-Term Follow-up and Single-Cell Multiomics Characteristics of Infusion Products in Patients with Chronic Lymphocytic Leukemia Treated with CD19 CAR-T Cells

Lymphodepletion chemotherapy followed by infusion of autologous T cells engineered to express a CD19-targeted chimeric antigen receptor …

Hirayama AV, Zheng Y , Dowling MR, Sheih A, Phi TD, Kirchmeier DR, Chucka AW, Gauthier J, Maloney DG, Gottardo R, Turtle CJ